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Update python-hivclustering to 1.8.0 #51085

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merged 1 commit into from
Oct 1, 2024
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@BiocondaBot BiocondaBot commented Oct 1, 2024

Update python-hivclustering: 1.6.81.8.0

install with bioconda Conda

Info Link or Description
Recipe recipes/python-hivclustering (click to view/edit other files)
Summary A Python 3 library that makes inferences on HIV-1 transmission networks.
Home https://github.com/veg/hivclustering
Releases https://github.com/veg/hivclustering/tags
Author @veg

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 1, 2024
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coderabbitai bot commented Oct 1, 2024

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the python-hivclustering package, incrementing the version from "1.6.8" to "1.8.0" and updating the corresponding SHA256 checksum for the source tarball. The build script and the requirements for both host and run environments remain unchanged, with no modifications to the overall structure or content of the file.

Changes

File Change Summary
recipes/python-hivclustering/meta.yaml Version updated from "1.6.8" to "1.8.0"; SHA256 checksum updated.

Possibly related PRs

  • Update pybiolib to 1.2.181 #51015: Updates the pybiolib package's version from 1.2.174 to 1.2.181, similar to the version increment in python-hivclustering.
  • Update pybiolib to 1.2.185 #51053: Updates the pybiolib package's version from 1.2.181 to 1.2.185, reflecting a version increment akin to the main PR for python-hivclustering.
  • Update agfusion to 1.4.3 #51041: Updates the agfusion package's version from 1.4.1 to 1.4.3, analogous to the version update in the main PR for python-hivclustering.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 0a885b4 and abbb4e0.

📒 Files selected for processing (1)
  • recipes/python-hivclustering/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/python-hivclustering/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (3)
recipes/python-hivclustering/meta.yaml (3)

1-1: Version update looks good.

The version has been correctly updated from 1.6.8 to 1.8.0, which is consistent with the PR objectives.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


10-10: Verify the SHA256 checksum.

The SHA256 checksum has been updated, which is expected with a new version. However, we should verify that this checksum is correct for version 1.8.0 of the package.

To verify the checksum, run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the source tarball

# Download the tarball
curl -L https://github.com/veg/hivclustering/archive/1.8.0.tar.gz -o hivclustering-1.8.0.tar.gz

# Calculate the SHA256 checksum
calculated_checksum=$(sha256sum hivclustering-1.8.0.tar.gz | awk '{print $1}')

# Compare with the checksum in the recipe
expected_checksum="f331d44e4998149de1aa612539b15dd20c1318b411fa0a3581406a59a211adba"

if [ "$calculated_checksum" = "$expected_checksum" ]; then
    echo "Checksum verified successfully."
else
    echo "Checksum mismatch!"
    echo "Calculated: $calculated_checksum"
    echo "Expected:   $expected_checksum"
fi

# Clean up
rm hivclustering-1.8.0.tar.gz

Line range hint 22-28: Verify dependencies for the new version.

The dependencies in the requirements section haven't changed. Please verify that these dependencies are still correct and sufficient for version 1.8.0 of python-hivclustering.

Specifically, check if the following dependencies need updates:

  • python-bioext >=0.19.0
  • python-hyphy-python >=0.1.11
  • python-hppy >=0.9.9

To assist in verifying the dependencies, you can run the following script to check the setup.py or pyproject.toml file of the new version:

Please review the output and update the dependencies if necessary.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


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@mencian mencian merged commit 13a20d8 into master Oct 1, 2024
7 checks passed
@mencian mencian deleted the bump/python_hivclustering branch October 1, 2024 22:21
@coderabbitai coderabbitai bot mentioned this pull request Oct 5, 2024
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